蚕豆对除草剂灭草松耐药基因挖掘

    Mining of resistance gene of Vicia faba to herbicide bentazone

    • 摘要: 为鉴定蚕豆对除草剂灭草松代谢过程中可能涉及到的重要基因,明确蚕豆对灭草松的代谢解毒机制。本研究以灭草松处理0 d和3 d的耐药蚕豆品种‘VF4’及敏感蚕豆品种‘小红蚕豆’的叶片为材料,利用RNA-Seq技术进行分析。测序结果表明,共获得46 892 242~52 525 260条Raw Reads,其中Clean Reads 有46 025 006~51 412 088条。韦恩图结果表明,各组间共同差异表达基因有512个。KEGG富集分析结果表明,这512个差异表达基因主要参与了异黄酮生物合成、过氧化物酶体、二萜生物合成等代谢途径。进一步分析表明,灭草松处理上调了耐药蚕豆中CYP71D9、CYP81E8、MC5MAT1、MC5MAT2、IF3H、CXE12、CXE6、PODDCR、KAO2、CYP82G1、GA201-D、GST23、GSTsGSTsF9基因的表达。上述基因可能与蚕豆耐灭草松有关。实时荧光定量 (qRT-PCR) 相对表达量和转录组测序结果变化趋势基本一致,证明转录组测序结果可靠。本研究明确了蚕豆对灭草松代谢过程中可能涉及到的重要基因,为灭草松耐性机理研究提供蚕豆数据,为耐除草剂蚕豆品种的遗传育种研究提供潜在的基因资源。

       

      Abstract: To identify the important genes that may be involved in the metabolic process of Vicia faba to bentazone, and to clarify the metabolic detoxification mechanism, this study analyzed the leaf gene expression pattern of both a drug-resistant V. faba cv. VF4 and sensitive V. faba cv. Xiaohong after treatment with bentazone for 0 and 3 days using RNA-Seq technique. The sequencing results showed that a total of 46 892 242-52 525 260 Raw Reads were obtained, with 46 025 006-51 412 088 Clean Reads remaining after quality control. Wenn analysis showed that there were 512 common differentially expressed genes in all groups. KEGG enrichment showed that these 512 differentially expressed genes were mainly involved in isoflavone biosynthesis, peroxisome, diterpene biosynthesis, and other metabolic pathways. Further analysis showed that the expressions of CYP71D9, CYP81E8, MC5MAT1, MC5MAT2, IF3H, CXE12, CXE6, PODDCR, KAO2, CYP82G1, GA201-D, GST23, GSTs and GSTsF9 genes in the above metabolic pathways were up-regulated in drug-resistant V. faba after bentazone treatment, indicating that these genes may be involved in the resistance pathway of V. faba to bentazone. The expression profiles of these genes, as determined by qRT-PCR, were consistent with those obtained from transcriptome sequencing, confirming the reliability of transcriptome sequencing results. This study identifies the key genes potentially involved in the metabolic process of V. faba in response to bentazone, providing valuable materials for investigating the mechanism of bentazone tolerance. It also provides gene resources for the genetic breeding of herbicide-tolerant V. faba varieties.

       

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