细菌m-DAP/赖氨酸合成途径关键酶DapE生物学功能及其抑制剂研究进展

    Advances in biological functions and inhibitors of the key enzyme DapE in bacterial m-DAP/ lysine biosynthetic pathway

    • 摘要: dapE编码的琥珀酰二氨基庚二酸脱琥珀酰基酶 (N-succinyl-L,L-diaminopimelic acid desuccinylase, DapE)是一种具有金属依赖性的水解酶,是细菌内消旋二氨基庚二酸(meso-diaminopimelic, m-DAP)/赖氨酸合成途径中的关键酶,催化N-琥珀酰-L,L-二氨基庚二酸水解形成L,L-二氨基庚二酸和琥珀酸,对于细菌进一步合成肽聚糖和赖氨酸至关重要。敲除dapE阻断赖氨酸合成途径可能阻止大多数细菌细胞壁/蛋白合成所需的m-DAP/赖氨酸,影响细菌的正常生长和繁殖。由于哺乳动物没有赖氨酸合成途径,靶向DapE抑制剂可能对细菌具有选择性毒性,对人类及其他哺乳动物影响微乎其微。本文对DapE在细菌m-DAP/赖氨酸生物合成途径中的重要性、三维结构、活性位点、催化机理和靶向抑制剂研究进展进行综述,以期为靶向DapE先导化合物的发现和防治植物细菌性病害农药活性分子设计提供指导。

       

      Abstract: N-Succinyl-L,L-diaminopimelic acid desuccinylase (DapE) encoded by dapE is a metal-dependent hydrolase and a key enzyme in the bacterial meso-diaminopimelic(m-DAP)/lysine biosynthetic pathway. DapE catalyzes hydrolysis of N-succinyl-L,L-diaminopimelic acid to form L,L-diaminopimelic acid and succinic acid, which are essential for the further synthesis of peptidoglycan and lysine. Knocking out the dapE will block lysine biosynthesis in bacteria and prevent most bacterial cell walls/protein from synthesizing the required m-DAP/lysine, thus affecting normal bacterial growth and reproduction. As there are no similar biosynthetic pathways in mammals, inhibiting DapE could selectively target bacteria while leaving humans and other mammals unaffected. In this review, we summarize the importance, three-dimensional structure, active site, catalytic mechanism and inhibitors targeting DapE in bacterial m-DAP/lysine biosynthetic pathway with a view to providing guidance for the discovery of lead compounds targeting DapE and and the design ofactive molecules for pesticides against plant bacterial diseases.

       

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